Overview Isolates Hosts Proteins Evidence & Diagnostics Literature Geographic Distribution Taxonomy Evidence Graph →

Yellow head virus

Roniviridae Arthropoda extended

EU170438.1

NCBI FASTA

Genome And Source

Length
795
Type
ssRNA(+)
GC%
47.5%
Completeness
partial_sequence
Country
Thailand
Year
1999

Curation Status

105
Isolates
7
Hosts
1
Proteins
OK
Sequence

Outbreak Events

China (1990)

Major outbreaks in Thailand (1990s), China, Vietnam; historically caused 100% mortality in affected ponds

Reference

Non-virulence of a recombinant shrimp nidovirus is associated with its non structural gene sequence and not a large structural gene deletion.

Gangnonngiw Warachin; Anantasomboon Gun; Sang-oum Wiwat; Sriurairatana Siriporn; Sritunyalucksana Kallaya; Flegel Timothy W

Virology 2009

PMID: 19073334 DOI: 10.1016/j.virol.2008.10.044

ICTV Mapping

No reviewed species-level mapping is available. Family-level ICTV references:

  • Nimanivirus lahi (Nimanivirus)
  • Okavirus branchiae (Okavirus)
  • Okavirus flavicapitis (Okavirus)
  • Okavirus orientale (Okavirus)

Reviewed Evidence

Only reviewed evidence linked to this sequence's source publication is shown here. Evidence from other studies is not displayed on this page.

Virulence / pathogenicity

Auto-extracted: pathogenicity in 'Non-virulence of a recombinant shrimp nidovirus is associated with its non structural gene sequence and not a large structural gene deletion.'
No value text
pathogenicity - high - DOI: 10.1016/j.virol.2008.10.044
Auto-extracted: mortality in 'Non-virulence of a recombinant shrimp nidovirus is associated with its non structural gene sequence and not a large structural gene deletion.'
No value text
mortality - high - DOI: 10.1016/j.virol.2008.10.044

Hosts

Fenneropenaeus chinensis
Penaeidae
Litopenaeus vannamei
Penaeidae
Penaeus chinensis
Penaeidae
Penaeus monodon
Penaeidae
Penaeus semisulcatus
Penaeidae
Penaeus spp.
Penaeidae
Penaeus stylirostris
Penaeidae

Diagnostic And Control Records

Control methods

SPF broodstock and water quality management
biosecurity - high
Prevention through SPF stocks and stress reduction. No effective vaccine or treatment available.

Proteins

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Related Literature (423 articles)

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Geographic Distribution

Thailand 40 isolates
China 33 isolates
Mexico 10 isolates
Egypt 6 isolates
Canada 5 isolates
Australia 5 isolates
South Korea 4 isolates

Taxonomy Information

Family
Roniviridae
Host Phylum
Arthropoda
Genome Type
ssRNA(+)
Discovery Method
isolated_and_cultured

Related Isolates

Accession Length GC Completeness Country Year
AF102829.1 577 44.2 partial_sequence Thailand 1999
AF148846.1 1,160 46.1 partial_sequence Canada 2023
DQ073920.1 1,585 54.1 mRNA Canada 2023
DQ978355.1 1,031 48.5 partial_sequence Mexico 2000
DQ978356.1 1,550 46.5 partial_sequence Mexico 2000
DQ978357.1 830 45.9 partial_sequence Mexico 2000
DQ978358.1 918 45.1 partial_sequence Mexico 2000
DQ978359.1 2,540 43.5 partial_sequence Mexico 2000
DQ978360.1 717 46.0 gene_fragment Mexico 2000
DQ978361.1 1,013 40.4 partial_sequence Mexico 2000
DQ978362.1 842 42.8 partial_sequence Mexico 2000
DQ978363.1 313 45.4 partial_sequence Mexico 2000
EF156404.1 441 47.6 gene_fragment Thailand 1999
EF156405.1 5,001 43.1 gene_fragment Thailand 1999
EF648276.1 277 46.9 partial_sequence Mexico 2003
EU123854.1 802 38.0 partial_sequence Thailand 1999
EU170438.1 795 47.5 partial_sequence Thailand 1999
EU487200.1 26,662 45.6 complete_genome Thailand 2002
EU784957.1 231 38.5 partial_sequence Thailand 2000
EU784958.1 231 40.3 partial_sequence Thailand 2000
EU784959.1 231 39.8 partial_sequence China 2000
EU784960.1 231 40.3 partial_sequence Thailand 2000
EU784961.1 231 40.3 partial_sequence China 2000
EU784962.1 231 40.3 partial_sequence China 2000
EU784963.1 231 40.3 partial_sequence China 2000
EU784964.1 231 39.8 partial_sequence Thailand 2000
EU784965.1 231 39.8 partial_sequence Thailand 2008
EU784982.1 659 43.4 partial_sequence Thailand 2003
EU784984.1 659 43.2 partial_sequence Thailand 2001
EU784991.1 659 43.4 partial_sequence Thailand 2003
EU784998.1 659 43.4 partial_sequence Thailand 2003
EU784999.1 659 43.4 partial_sequence Thailand 2003
EU785000.1 659 43.1 partial_sequence Thailand 2003
EU785001.1 659 43.2 partial_sequence Thailand 2002
EU785004.1 659 43.4 partial_sequence Thailand 2001
EU785019.1 659 43.2 partial_sequence Thailand 2001
EU785023.1 659 43.4 partial_sequence Thailand 2003
EU785032.1 659 43.4 partial_sequence Thailand 2000
EU785033.1 659 43.7 partial_sequence Thailand 2008
EU785034.1 659 43.2 partial_sequence Thailand 2001
EU785035.1 659 43.2 partial_sequence Thailand 2003
EU853170.1 671 45.0 partial_sequence Thailand 2005
EU965321.1 1,801 58.9 mRNA Canada 2023
EU977577.1 1,005 48.7 partial_sequence Thailand 2008
EU977578.1 1,629 46.1 partial_sequence Thailand 2008
EU977579.1 859 44.9 partial_sequence Thailand 2008
EU977580.1 2,539 43.6 partial_sequence Thailand 2008
EU977581.1 417 46.8 partial_sequence Thailand 2008
EU977582.1 969 40.7 partial_sequence Thailand 2008
EU977583.1 866 42.8 partial_sequence Thailand 2008
EU977584.1 286 49.0 unknown Thailand 2008
EW703030.1 528 46.6 mRNA Canada 2023
EX827466.1 224 43.3 mRNA Canada 2023
FJ194949.1 5,982 42.8 partial_sequence Thailand 2006
FJ627274.1 18,030 29.5 partial_sequence Thailand 2007
FJ848673.1 26,673 45.9 complete_genome Thailand 1992
FJ848674.1 26,662 45.5 complete_genome Thailand 1995
FJ848675.1 26,652 45.5 complete_genome Thailand 1999
KF278563.1 748 48.0 mRNA China 2012
KF278564.1 226 49.1 mRNA China 2013
KF278565.1 229 46.3 mRNA China 2013
KP738160.1 748 48.0 partial_sequence Australia 2012
KP738161.1 307 44.3 partial_sequence Australia 2012
KP738162.1 307 44.0 partial_sequence Australia 2012
KP738163.1 307 44.0 partial_sequence Australia 2012
KP738164.1 670 46.4 partial_sequence Australia 2012
KT316276.1 842 42.8 partial_sequence Egypt 2014
KT316277.1 918 45.1 partial_sequence Egypt 2014
KT316280.1 1,013 40.4 partial_sequence Egypt 2014
KT316282.1 5,001 43.1 gene_fragment Egypt 2014
KT316283.1 1,550 46.5 partial_sequence Egypt 2014
KX947267.1 26,769 46.6 complete_genome China 2012
KY786110.1 748 48.0 partial_sequence Egypt 2016
MH187155.1 670 45.2 partial_sequence China 2016
MH187156.1 670 45.1 partial_sequence China 2016
MH187157.1 670 45.1 partial_sequence China 2016
MZ496303.1 360 43.1 partial_sequence South Korea 2020
MZ496304.1 360 43.1 partial_sequence South Korea 2020
MZ496305.1 360 42.8 partial_sequence South Korea 2020
MZ496306.1 360 42.8 partial_sequence South Korea 2020
NC_043505 26,662 N/A N/A N/A N/A
NC_043505.1 26,662 45.6 complete_genome Thailand 2002
NC_048215.1 26,769 46.6 complete_genome China 2012
OP902188.1 656 44.0 unverified China 2020
OP902189.1 656 43.6 unverified China 2020
OP902190.1 656 44.0 unverified China 2020
OP902191.1 656 43.9 unverified China 2020
OP902192.1 656 43.6 unverified China 2020
OP902193.1 656 43.9 unverified China 2020
OP902194.1 656 43.8 unverified China 2020
OP902195.1 656 44.0 unverified China 2022
OP902196.1 656 43.9 unverified China 2022
OP902197.1 656 44.2 unverified China 2021
OP902198.1 656 44.0 unverified China 2021
OP902199.1 656 44.2 unverified China 2021
OP902200.1 656 43.9 unverified China 2021
OP902201.1 656 44.0 unverified China 2021
OP902202.1 656 43.9 unverified China 2021
OP902203.1 656 43.6 unverified China 2021
OP902204.1 656 43.8 unverified China 2021
OQ789701.1 1,569 45.5 unverified China 2023
OQ817845.1 1,021 42.4 partial_sequence China 2023
OQ817846.1 460 48.9 gene_fragment China 2023
OQ817847 753 N/A N/A China N/A
OQ817847.1 753 47.9 partial_sequence China 2023

Sequence

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