GU906896.1
Genome And Source
Length
969
Type
ssDNA(unspecified)
GC%
42.4%
Completeness
partial_sequence
Country
Mexico
Year
2004
Curation Status
147
Isolates
10
Hosts
1
Proteins
OK
Sequence
Outbreak Events
None
Global distribution; endemic in most shrimp farming regions; causes significant economic loss through growth reduction
Reference
Genetic signature of rapid IHHNV (infectious hypodermal and hematopoietic necrosis virus) expansion in wild Penaeus shrimp populations.
Robles-Sikisaka Refugio; Bohonak Andrew J; McClenaghan Leroy R; Dhar Arun K
PloS one 2010
PMID: 20668694
DOI: 10.1371/journal.pone.0011799
ICTV Mapping
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
manual_checked - high
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
auto_matched - high
Reviewed Evidence
Only reviewed evidence linked to this sequence's source publication is shown here. Evidence from other studies is not displayed on this page.
Virulence / pathogenicity
Auto-extracted: mortality in 'Genetic signature of rapid IHHNV (infectious hypodermal and hematopoietic necrosis virus) expansion in wild Penaeus shrimp populations.'
No value text
mortality - high - DOI: 10.1371/journal.pone.0011799
Pathogenicity terms found: lethal, virulence
No value text
pathogenicity - high - DOI: 10.1371/journal.pone.0011799
Temperature
Temperature data found: degree, °C
No value text
temperature - high - DOI: 10.1371/journal.pone.0011799
Hosts
Callinectes arcuatus
Portunidae
Farfantepenaeus californiensis
Penaeidae
Fenneropenaeus indicus
Penaeidae
Goniopsis cruentata
Grapsidae
Litopenaeus stylirostris
Penaeidae
Litopenaeus vannamei
Penaeidae
Macrobrachium rosenbergii
Palaemonidae
Penaeus monodon
Penaeidae
Penaeus spp.
Penaeidae
Penaeus stylirostris
Penaeidae
Diagnostic And Control Records
Diagnostic methods
IHHNV-PCR
Nucleic acid amplification - NS1/NS2 gene
high
IHHNV-qPCR
Nucleic acid amplification - NS1 gene
high
No single PCR test is sufficient to determine parvovirus IHHNV presence in or impact on farmed shrimp production
Nucleic acid amplification - target not specified
medium
Control methods
SPF broodstock certification
biosecurity - high
Elimination of IHHNV from breeding stocks through PCR screening and quarantine is the gold standard.
Astaxanthin (dietary)
immunostimulant - medium
Astaxanthin-enriched yeast improves growth, immunity and disease resistance in shrimp
DNA vaccine technology
vaccine - medium
Application of DNA vaccine technology to aquaculture
Proteins
Loading protein data...
Related Literature (1184 articles)
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Geographic Distribution
Mexico
94 isolates
Philippines
12 isolates
India
9 isolates
China
9 isolates
Vietnam
5 isolates
South Korea
3 isolates
Canada
3 isolates
Australia
3 isolates
Taxonomy Information
Family
Parvoviridae
Host Phylum
Arthropoda
Genome Type
ssDNA(unspecified)
Discovery Method
isolated_and_cultured
ICTV Classification Mapping
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
Shripenbrevirus decapod1
Parvoviridae / Shripenbrevirus
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| AF218266.2 | 3,909 | 43.0 | complete_genome | Canada | 2023 |
| AJ884914.1 | 356 | 42.4 | partial_sequence | Canada | 2023 |
| AY102034.1 | 3,216 | 43.1 | gene_fragment | N/A | 2003 |
| AY355306.1 | 3,742 | 42.8 | partial_sequence | China | 2016 |
| AY355307.1 | 3,749 | 43.2 | gene_fragment | China | 2004 |
| AY355308.1 | 3,742 | 42.8 | gene_fragment | China | 2004 |
| AY362547.1 | 3,667 | 42.7 | gene_fragment | Thailand | 2004 |
| AY362548.1 | 3,775 | 42.9 | gene_fragment | Ecuador | 2004 |
| AY590120.1 | 392 | 46.2 | partial_sequence | Australia | 1999 |
| AY590121.1 | 392 | 45.4 | partial_sequence | New Caledonia | 2004 |
| AY835846.1 | 358 | 44.1 | partial_sequence | Vietnam | 2005 |
| DQ057982.1 | 389 | 46.8 | partial_sequence | China | 2016 |
| DQ057983.1 | 389 | 47.0 | partial_sequence | China | 2016 |
| EF633688.1 | 3,833 | 43.0 | complete_genome | China | 2007 |
| EU518246.1 | 1,092 | 46.1 | gene_fragment | India | 2007 |
| EU552487.1 | 309 | 39.2 | partial_sequence | India | 2007 |
| EU675312.1 | 3,832 | 41.9 | complete_genome | Australia | 2004 |
| EU675313.1 | 911 | 42.5 | partial_sequence | Australia | 2003 |
| EU848309.1 | 1,896 | 43.9 | partial_sequence | India | 2008 |
| EU848310.1 | 279 | 46.6 | unknown | India | 2008 |
| EU848312.1 | 601 | 39.4 | partial_sequence | India | 2008 |
| FJ169961.1 | 990 | 42.5 | gene_fragment | India | 2007 |
| GU138649.1 | 1,004 | 40.6 | partial_sequence | Philippines | 2007 |
| GU138650.1 | 1,057 | 41.1 | partial_sequence | Philippines | 2008 |
| GU138651.1 | 1,080 | 41.2 | partial_sequence | Philippines | 2008 |
| GU138652.1 | 1,010 | 41.1 | partial_sequence | Philippines | 2008 |
| GU138653.1 | 1,011 | 41.0 | partial_sequence | Philippines | 2008 |
| GU138654.1 | 1,003 | 40.9 | partial_sequence | Philippines | 2008 |
| GU138655.1 | 1,158 | 41.2 | partial_sequence | Philippines | 2009 |
| GU138656.1 | 1,178 | 41.3 | partial_sequence | Philippines | 2007 |
| GU138657.1 | 1,150 | 41.3 | partial_sequence | Philippines | 2009 |
| GU138658.1 | 1,174 | 42.0 | partial_sequence | Philippines | 2009 |
| GU138659.1 | 1,160 | 41.9 | partial_sequence | Philippines | 2007 |
| GU138660.1 | 1,159 | 41.4 | partial_sequence | Philippines | 2009 |
| GU138661.1 | 1,080 | 41.9 | partial_sequence | Myanmar | 2007 |
| GU906889.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906890.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906891.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906892.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906893.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906894.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906895.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906896.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906897.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906898.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906899.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906900.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906901.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906902.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906903.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906904.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906905.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906906.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906907.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906908.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906909.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906910.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906911.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906912.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906913.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906914.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906915.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906916.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906917.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906918.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906919.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906920.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906921.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906922.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906923.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906924.1 | 969 | 42.4 | partial_sequence | Mexico | 2005 |
| GU906925.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906926.1 | 969 | 42.2 | partial_sequence | Mexico | 2004 |
| GU906927.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906928.1 | 969 | 42.2 | partial_sequence | Mexico | 2004 |
| GU906929.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906930.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906931.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906932.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906933.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906934.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906935.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906936.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906937.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906938.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906939.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906940.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906941.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906942.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906943.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906944.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906945.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906946.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906947.1 | 969 | 42.5 | partial_sequence | Mexico | 2004 |
| GU906948.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906949.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| GU906950.1 | 969 | 42.6 | partial_sequence | Mexico | 2005 |
| GU906951.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906952.1 | 969 | 42.2 | partial_sequence | Mexico | 2005 |
| GU906953.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906954.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906955.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906956.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906957.1 | 969 | 42.5 | partial_sequence | Mexico | 2005 |
| GU906958.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906959.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906960.1 | 969 | 42.3 | partial_sequence | Mexico | 2005 |
| GU906961.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906962.1 | 969 | 42.8 | partial_sequence | Mexico | 2005 |
| GU906963.1 | 969 | 42.5 | partial_sequence | Mexico | 2005 |
| GU906964.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906965.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906966.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906967.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906968.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906969.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906970.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906971.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906972.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906973.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906974.1 | 969 | 42.6 | partial_sequence | Mexico | 2004 |
| GU906975.1 | 969 | 42.3 | partial_sequence | Mexico | 2004 |
| GU906976.1 | 969 | 42.4 | partial_sequence | Mexico | 2004 |
| GU906977.1 | 969 | 42.7 | partial_sequence | Mexico | 2004 |
| HM536212.1 | 388 | 47.7 | partial_sequence | Malaysia | 2009 |
| HQ287006.1 | 356 | 43.0 | partial_sequence | China | 2001 |
| HQ699073.1 | 990 | 42.2 | gene_fragment | South Korea | 2010 |
| HQ699074.1 | 990 | 41.9 | gene_fragment | South Korea | 2010 |
| JN098516.1 | 429 | 44.8 | partial_sequence | India | 2010 |
| JN377975.1 | 3,914 | 43.1 | complete_genome | South Korea | 2010 |
| JN616415.1 | 3,815 | 43.5 | gene_fragment | Vietnam | 2009 |
| JX258653.1 | 3,901 | 42.8 | complete_genome | China | 2009 |
| JX840067.1 | 3,824 | 43.0 | complete_genome | Vietnam | 2012 |
| KC189612.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189613.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189614.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189615.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189616.1 | 208 | 43.8 | partial_sequence | Mexico | 2009 |
| KC189617.1 | 208 | 43.3 | partial_sequence | Mexico | 2009 |
| KC189618.1 | 208 | 42.8 | partial_sequence | Mexico | 2009 |
| KC189619.1 | 208 | 44.2 | partial_sequence | Mexico | 2009 |
| KC513422.1 | 3,824 | 43.2 | gene_fragment | Vietnam | 2011 |
| KF031144.1 | 3,912 | 43.2 | complete_genome | Vietnam | 2007 |
| KF214742.1 | 3,909 | 43.0 | complete_genome | China | 2011 |
| KF805628.1 | 391 | 48.1 | partial_sequence | India | 2014 |
| KF805629.1 | 389 | 47.0 | partial_sequence | India | 2014 |
| NC_002190.2 | 3,909 | 43.0 | complete_genome | Canada | 2023 |
Sequence
Loading sequence...