KY681039
Genome And Source
Length
1,434
Type
dsDNA
GC%
N/A
Completeness
N/A
Country
China
Year
N/A
Curation Status
30
Isolates
10
Hosts
1
Proteins
OK
Sequence
Outbreak Events
Canada
(2014 - 2024)
Decapod iridescent virus outbreak in Canada
Reference
Characterization of a new member of Iridoviridae, Shrimp hemocyte iridescent virus (SHIV), found in white leg shrimp (Litopenaeus vannamei).
Qiu Liang; Chen Meng-Meng; Wan Xiao-Yuan; Li Chen; Zhang Qing-Li; Wang Ruo-Yu; Cheng Dong-Yuan; Dong Xuan; Yang Bing; Wang Xiu-Hua; Xiang Jian-Hai; Huang Jie
Scientific reports 2017
PMID: 28928367
DOI: 10.1038/s41598-017-10738-8
ICTV Mapping
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
auto_matched - high
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
auto_matched - high
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
auto_matched - high
Lymphocystivirus micropogonias1
Iridoviridae / Lymphocystivirus
auto_matched - high
Reviewed Evidence
Only reviewed evidence linked to this sequence's source publication is shown here. Evidence from other studies is not displayed on this page.
Virulence / pathogenicity
Pathogenicity terms found: mortality, cumulative mortality, lethal, challenge, experimental infection
No value text
pathogenicity - high - DOI: 10.1038/s41598-017-10738-8
Confirmation of the causative pathogen by experimental challenge To further identify whether the potential iridescent virus was the aetiological agent, we conducted experimental challenges to two groups of health shrimp L.
No value text
pathogenicity - high - DOI: 10.1038/s41598-017-10738-8
Temperature
Temperature data found: °C
No value text
temperature - high - DOI: 10.1038/s41598-017-10738-8
Hosts
Bellamya sp.
Viviparidae
Cherax quadricarinatus
Parastacidae
Litopenaeus vannamei
Penaeidae
Litopenaeus vannamei
Penaeidae
Litopenaeus vannamei
Penaeidae
Macrobrachium nipponense
Palaemonidae
Macrobrachium rosenbergii
Palaemonidae
Macrobrachium rosenbergii
Palaemonidae
Penaeus spp.
Penaeidae
Penaeus spp.
Penaeidae
small fish
Mixed
tadpole
Multiple
water boatman
Corixidae
water strider
Gerridae
Diagnostic And Control Records
Diagnostic methods
Rapid Visual Detection of Decapod Iridescent Virus 1 (DIV1) by RPA Combined With LFS.
Nucleic acid amplification - target not specified
medium
Control methods
SSR marker-assisted selection
selective_breeding - medium
Simple sequence repeat marker for disease resistance in shrimp
Proteins
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Related Literature (1845 articles)
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Geographic Distribution
China
16 isolates
Canada
3 isolates
Singapore
1 isolates
Mexico
1 isolates
Taxonomy Information
Family
Iridoviridae
Host Phylum
Arthropoda
Genome Type
dsDNA
Discovery Method
metagenomic_with_host_evidence
ICTV Classification Mapping
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
Lymphocystivirus micropogonias1
Iridoviridae / Lymphocystivirus
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| CN950619.1 | 552 | 33.5 | mRNA | Canada | 2023 |
| KY681039 | 1,434 | N/A | N/A | China | N/A |
| KY681039.1 | 1,434 | 44.1 | gene_fragment | China | 2014 |
| KY681040 | 1,200 | N/A | N/A | China | N/A |
| KY681040.1 | 1,200 | 39.0 | partial_sequence | China | 2014 |
| MF599468 | 165,809 | N/A | N/A | China | N/A |
| MF599468.1 | 165,809 | 34.6 | complete_genome | China | 2014 |
| MK509921 | 347 | N/A | N/A | China | N/A |
| MK509921.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509922 | 347 | N/A | N/A | China | N/A |
| MK509922.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509923 | 347 | N/A | N/A | China | N/A |
| MK509923.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509924 | 347 | N/A | N/A | China | N/A |
| MK509924.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509925 | 347 | N/A | N/A | China | N/A |
| MK509925.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MW039594.1 | 1,123 | 45.4 | partial_sequence | Singapore | 2021 |
| MW039595.1 | 1,123 | 45.4 | partial_sequence | Canada | 2021 |
| MW039596.1 | 1,123 | 45.4 | partial_sequence | Canada | 2021 |
| NC_055165 | 165,809 | N/A | N/A | N/A | N/A |
| NC_055165.1 | 165,809 | 34.6 | complete_genome | China | 2014 |
| OP484891 | 458 | N/A | N/A | China | N/A |
| OP484891.1 | 458 | 41.7 | partial_sequence | China | 2023 |
| OP604534.1 | 167,330 | 34.6 | complete_genome | China | 2021 |
| OR448829.1 | 402 | 40.5 | partial_sequence | China | 2021 |
| PP400973 | 188 | N/A | N/A | N/A | N/A |
| PP400973.1 | 188 | 44.1 | partial_sequence | Mexico | 2022 |
| PQ724921.1 | 166,964 | 34.6 | complete_genome | China | 2023 |
| PV608400.1 | 1,221 | 37.6 | unverified | China | 2024 |
Sequence
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