NC_055165.1
Genome And Source
Length
165,809
Type
dsDNA
GC%
34.6%
Completeness
complete_genome
Country
China
Year
2014
Curation Status
30
Isolates
10
Hosts
170
Proteins
OK
Sequence
Outbreak Events
Canada
(2014 - 2024)
Decapod iridescent virus outbreak in Canada
Reference
Complete genome sequence of shrimp hemocyte iridescent virus (SHIV) isolated from white leg shrimp, Litopenaeus vannamei.
Qiu Liang; Chen Meng-Meng; Wang Ruo-Yu; Wan Xiao-Yuan; Li Chen; Zhang Qing-Li; Dong Xuan; Yang Bing; Xiang Jian-Hai; Huang Jie
Archives of virology 2018
PMID: 29181623
DOI: 10.1007/s00705-017-3642-4
ICTV Mapping
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
auto_matched - high
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
auto_matched - high
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
auto_matched - high
Lymphocystivirus micropogonias1
Iridoviridae / Lymphocystivirus
auto_matched - high
Reviewed Evidence
Only reviewed evidence linked to this sequence's source publication is shown here. Evidence from other studies is not displayed on this page.
Virulence / pathogenicity
Pathogenicity terms found: mortality
No value text
pathogenicity - high - DOI: 10.1007/s00705-017-3642-4
Hosts
Bellamya sp.
Viviparidae
Cherax quadricarinatus
Parastacidae
Litopenaeus vannamei
Penaeidae
Litopenaeus vannamei
Penaeidae
Litopenaeus vannamei
Penaeidae
Macrobrachium nipponense
Palaemonidae
Macrobrachium rosenbergii
Palaemonidae
Macrobrachium rosenbergii
Palaemonidae
Penaeus spp.
Penaeidae
Penaeus spp.
Penaeidae
small fish
Mixed
tadpole
Multiple
water boatman
Corixidae
water strider
Gerridae
Diagnostic And Control Records
Diagnostic methods
Rapid Visual Detection of Decapod Iridescent Virus 1 (DIV1) by RPA Combined With LFS.
Nucleic acid amplification - target not specified
medium
Control methods
SSR marker-assisted selection
selective_breeding - medium
Simple sequence repeat marker for disease resistance in shrimp
Proteins
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Related Literature (1845 articles)
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Geographic Distribution
China
16 isolates
Canada
3 isolates
Singapore
1 isolates
Mexico
1 isolates
Taxonomy Information
Family
Iridoviridae
Host Phylum
Arthropoda
Genome Type
dsDNA
Discovery Method
metagenomic_with_host_evidence
ICTV Classification Mapping
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
Decapodiridovirus litopenaeus1
Iridoviridae / Decapodiridovirus
Lymphocystivirus micropogonias1
Iridoviridae / Lymphocystivirus
Related Isolates
| Accession | Length | GC | Completeness | Country | Year |
|---|---|---|---|---|---|
| CN950619.1 | 552 | 33.5 | mRNA | Canada | 2023 |
| KY681039 | 1,434 | N/A | N/A | China | N/A |
| KY681039.1 | 1,434 | 44.1 | gene_fragment | China | 2014 |
| KY681040 | 1,200 | N/A | N/A | China | N/A |
| KY681040.1 | 1,200 | 39.0 | partial_sequence | China | 2014 |
| MF599468 | 165,809 | N/A | N/A | China | N/A |
| MF599468.1 | 165,809 | 34.6 | complete_genome | China | 2014 |
| MK509921 | 347 | N/A | N/A | China | N/A |
| MK509921.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509922 | 347 | N/A | N/A | China | N/A |
| MK509922.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509923 | 347 | N/A | N/A | China | N/A |
| MK509923.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509924 | 347 | N/A | N/A | China | N/A |
| MK509924.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MK509925 | 347 | N/A | N/A | China | N/A |
| MK509925.1 | 347 | 49.0 | partial_sequence | China | 2018 |
| MW039594.1 | 1,123 | 45.4 | partial_sequence | Singapore | 2021 |
| MW039595.1 | 1,123 | 45.4 | partial_sequence | Canada | 2021 |
| MW039596.1 | 1,123 | 45.4 | partial_sequence | Canada | 2021 |
| NC_055165 | 165,809 | N/A | N/A | N/A | N/A |
| NC_055165.1 | 165,809 | 34.6 | complete_genome | China | 2014 |
| OP484891 | 458 | N/A | N/A | China | N/A |
| OP484891.1 | 458 | 41.7 | partial_sequence | China | 2023 |
| OP604534.1 | 167,330 | 34.6 | complete_genome | China | 2021 |
| OR448829.1 | 402 | 40.5 | partial_sequence | China | 2021 |
| PP400973 | 188 | N/A | N/A | N/A | N/A |
| PP400973.1 | 188 | 44.1 | partial_sequence | Mexico | 2022 |
| PQ724921.1 | 166,964 | 34.6 | complete_genome | China | 2023 |
| PV608400.1 | 1,221 | 37.6 | unverified | China | 2024 |
Sequence
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